When operating DeepVariant, the software program could make the most of a chosen momentary listing, reminiscent of `/tmp/tmpcgn0s8jv`, to retailer intermediate recordsdata generated throughout the variant calling course of. This listing serves as a workspace for holding knowledge like aligned reads, assembled candidate variants, and different momentary outputs. The particular listing path, usually randomly generated throughout the `/tmp` filesystem, ensures that these recordsdata are remoted and managed effectively.
Storing intermediate recordsdata in a chosen location provides a number of benefits. It facilitates environment friendly knowledge administration, as all intermediate outputs are consolidated inside a single, simply accessible location. This streamlines the variant calling workflow and simplifies cleanup procedures after the evaluation completes. Moreover, using the momentary filesystem (`/tmp`) leverages its inherent properties recordsdata saved inside `/tmp` are sometimes eliminated upon system reboot, stopping accumulation of pointless knowledge. This automated cleanup mechanism contributes to environment friendly disk house utilization and reduces the chance of cluttering the first file system with momentary knowledge. This apply additionally promotes reproducibility, as subsequent runs may doubtlessly leverage cached knowledge if out there and correctly configured.
